PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018333.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 439aa    MW: 44427.6 Da    PI: 7.1172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018333.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.6e-10280327455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Do018333.1 280 SHSLAERVRRERISERMKMLQSLVPGC----NKITGKALMLDEIINYVQSLQ 327
                 8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17274344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-11274331No hitNo description
Gene3DG3DSA:4.10.280.106.0E-17276345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7280327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-10282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MADEHFFPGP GDFPSGLGAA PPFFGSSYAP PPPLGLDAAM QGLGLAWADL QMADSSSAAA  60
AATAHFDSAL SSLVSSPAHD GSGCGAGAGD DVAIGDLIGR LGSICSAAAA AVASASNSCY  120
STPLSSPPRG APPSAAAALA FRGCGYPGGA AAAALETAGT GRLSRVASSK SLGAGGAATP  180
ALEQSPEAAE TSPKGTGMRD PAPTAKANGG AARKRKASGK GKATSSAMVC TTAAPFNAKR  240
SKVAAGGGAE GKDDDAAAEE EKAAKDYIHV RARRGQATDS HSLAERVRRE RISERMKMLQ  300
SLVPGCNKIT GKALMLDEII NYVQSLQRQV EFLSMKLATM NPELDADARY QTATAMLACQ  360
YQPATAAADP SFVATAHHAQ QLDYSCAGAF RPDGWELSQD LQSVVARHST AAGAGAVHDH  420
YLLYPSPSSP PAHSSFHGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977901.21e-158PREDICTED: transcription factor bHLH78-like
TrEMBLA0A0A8YTR01e-125A0A0A8YTR0_ARUDO; Uncharacterized protein
STRINGMLOC_66841.11e-106(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.13e-44bHLH family protein